IL_8VOS_036

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8VOS|1|D|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOS_036 not in the Motif Atlas

Geometric match to IL_5J7L_039

Geometric discrepancy: 0.0638

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8VOS|1|D|G|922
8VOS|1|D|A|923
*
8VOS|1|D|U|1393
8VOS|1|D|A|1394
8VOS|1|D|C|1395

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 60 nt long spacer

Chain K

Small ribosomal subunit protein uS5