IL_8VOS_041

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

8VOS|1|D|U|1030, 8VOS|1|D|C|1031, 8VOS|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|D|G|1003
8VOS|1|D|A|1004
8VOS|1|D|A|1005
8VOS|1|D|G|1006
*
8VOS|1|D|U|1023
8VOS|1|D|G|1024
8VOS|1|D|U|1025
8VOS|1|D|G|1026
8VOS|1|D|C|1027
8VOS|1|D|C|1028
8VOS|1|D|U|1029
8VOS|1|D|U|1030
8VOS|1|D|C|1031
8VOS|1|D|G|1032
8VOS|1|D|G|1033
8VOS|1|D|G|1034
8VOS|1|D|A|1035
8VOS|1|D|A|1036
8VOS|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein uS14