IL_8VOS_051

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAAGCGACC*GCAAGCGGACC

Length

20 nucleotides

Bulged bases

8VOS|1|D|A|1257, 8VOS|1|D|A|1280, 8VOS|1|D|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOS|1|D|G|1255
8VOS|1|D|A|1256
8VOS|1|D|A|1257
8VOS|1|D|G|1258
8VOS|1|D|C|1259
8VOS|1|D|G|1260
8VOS|1|D|A|1261
8VOS|1|D|C|1262
8VOS|1|D|C|1263
*
8VOS|1|D|G|1272
8VOS|1|D|C|1273
8VOS|1|D|A|1274
8VOS|1|D|A|1275
8VOS|1|D|G|1276
8VOS|1|D|C|1277
8VOS|1|D|G|1278
8VOS|1|D|G|1279
8VOS|1|D|A|1280
8VOS|1|D|C|1281
8VOS|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain AB

Transcription termination/antitermination protein NusG

Chain I

Small ribosomal subunit protein uS3

Chain P

Small ribosomal subunit protein uS10

Chain S

Small ribosomal subunit protein uS14

Chain W

Small ribosomal subunit protein uS19