IL_8VOS_052

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOS_052 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.0794

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8VOS|1|D|C|1303
8VOS|1|D|G|1304
8VOS|1|D|G|1305
8VOS|1|D|A|1306
8VOS|1|D|U|1307
8VOS|1|D|U|1308
*
8VOS|1|D|A|1329
8VOS|1|D|U|1330
8VOS|1|D|G|1331
8VOS|1|D|A|1332
8VOS|1|D|A|1333
8VOS|1|D|G|1334

Current chains

Chain D

16S rRNA

Nearby chains

Chain X

Small ribosomal subunit protein uS13