IL_8VOS_128

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8VOS|1|a|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOS_128 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0585

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VOS|1|a|C|1686
8VOS|1|a|G|1687
8VOS|1|a|U|1688
8VOS|1|a|A|1689
8VOS|1|a|A|1690
8VOS|1|a|C|1691
*
8VOS|1|a|G|1696
8VOS|1|a|G|1697
8VOS|1|a|A|1698
8VOS|1|a|G|1699
8VOS|1|a|A|1700
8VOS|1|a|A|1701
8VOS|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain h

50S ribosomal protein L2