IL_8VPK_001
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VPK_001 not in the Motif Atlas
- Homologous match to IL_9DFE_001
- Geometric discrepancy: 0.1054
- The information below is about IL_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VPK|1|A|G|21
8VPK|1|A|U|22
8VPK|1|A|G|23
8VPK|1|A|G|24
8VPK|1|A|A|25
8VPK|1|A|U|26
8VPK|1|A|G|27
*
8VPK|1|A|C|597
8VPK|1|A|U|598
8VPK|1|A|G|599
8VPK|1|A|A|600
8VPK|1|A|A|601
8VPK|1|A|A|602
8VPK|1|A|C|603
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain R
- 50S Ribosomal Protein L20
- Chain T
- 50S Ribosomal Protein L22
- Chain b
- 50S ribosomal protein L32
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