IL_8VPK_013

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

8VPK|1|A|G|591, 8VPK|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_013 not in the Motif Atlas

Geometric match to IL_8P9A_243

Geometric discrepancy: 0.11

The information below is about IL_8P9A_243

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

8VPK|1|A|G|569
8VPK|1|A|U|570
8VPK|1|A|A|571
8VPK|1|A|C|572
*
8VPK|1|A|G|583
8VPK|1|A|A|584
8VPK|1|A|G|585
8VPK|1|A|U|586
8VPK|1|A|G|587
8VPK|1|A|A|588
8VPK|1|A|A|589
8VPK|1|A|A|590
8VPK|1|A|G|591
8VPK|1|A|A|592
8VPK|1|A|G|593
8VPK|1|A|U|594
8VPK|1|A|A|595
8VPK|1|A|C|596

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S Ribosomal Protein L22

Chain V

50S ribosomal protein L24