IL_8VPK_018

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UUAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_018 not in the Motif Atlas

Homologous match to IL_7A0S_013

Geometric discrepancy: 0.1392

The information below is about IL_7A0S_013

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VPK|1|A|U|699
8VPK|1|A|U|700
8VPK|1|A|A|701
8VPK|1|A|A|702
8VPK|1|A|C|703
*
8VPK|1|A|G|712
8VPK|1|A|G|713
8VPK|1|A|U|714
8VPK|1|A|A|715
8VPK|1|A|G|716

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain M

50S ribosomal protein L15