IL_8VPK_020
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GAAGC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8VPK|1|A|G|916, 8VPK|1|A|G|920
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VPK_020 not in the Motif Atlas
- Homologous match to IL_9DFE_016
- Geometric discrepancy: 0.1383
- The information below is about IL_9DFE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VPK|1|A|G|789
8VPK|1|A|A|790
8VPK|1|A|A|791
8VPK|1|A|G|792
8VPK|1|A|C|793
*
8VPK|1|A|G|914
8VPK|1|A|U|915
8VPK|1|A|G|916
8VPK|1|A|A|917
8VPK|1|A|U|918
8VPK|1|A|A|919
8VPK|1|A|G|920
8VPK|1|A|C|921
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S Ribosomal Protein L4
- Chain M
- 50S ribosomal protein L15
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