IL_8VPK_028
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUCGCAUGUUUC*GUCCAAGAGUGCGGC
- Length
- 27 nucleotides
- Bulged bases
- 8VPK|1|A|C|1045, 8VPK|1|A|C|1046, 8VPK|1|A|G|1049
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VPK|1|A|G|953
8VPK|1|A|U|954
8VPK|1|A|C|955
8VPK|1|A|G|956
8VPK|1|A|C|957
8VPK|1|A|A|958
8VPK|1|A|U|959
8VPK|1|A|G|960
8VPK|1|A|U|961
8VPK|1|A|U|962
8VPK|1|A|U|963
8VPK|1|A|C|964
*
8VPK|1|A|G|1043
8VPK|1|A|U|1044
8VPK|1|A|C|1045
8VPK|1|A|C|1046
8VPK|1|A|A|1047
8VPK|1|A|A|1048
8VPK|1|A|G|1049
8VPK|1|A|A|1050
8VPK|1|A|G|1051
8VPK|1|A|U|1052
8VPK|1|A|G|1053
8VPK|1|A|C|1054
8VPK|1|A|G|1055
8VPK|1|A|G|1056
8VPK|1|A|C|1057
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain M
- 50S ribosomal protein L15
- Chain e
- 50S ribosomal protein L35
Coloring options: