IL_8VPK_034

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGCCGAUG*CUGACGU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|G|989
8VPK|1|A|G|990
8VPK|1|A|C|991
8VPK|1|A|C|992
8VPK|1|A|G|993
8VPK|1|A|A|994
8VPK|1|A|U|995
8VPK|1|A|G|996
*
8VPK|1|A|C|1012
8VPK|1|A|U|1013
8VPK|1|A|G|1014
8VPK|1|A|A|1015
8VPK|1|A|C|1016
8VPK|1|A|G|1017
8VPK|1|A|U|1018

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain N

Large ribosomal subunit protein uL16