IL_8VPK_044
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CGCGAAGACAACC*GGUCAAGUG
- Length
- 22 nucleotides
- Bulged bases
- 8VPK|1|A|G|1162, 8VPK|1|A|A|1163, 8VPK|1|A|A|1164, 8VPK|1|A|C|1167, 8VPK|1|A|A|1168, 8VPK|1|A|C|1170, 8VPK|1|A|G|1230, 8VPK|1|A|U|1231
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VPK|1|A|C|1159
8VPK|1|A|G|1160
8VPK|1|A|C|1161
8VPK|1|A|G|1162
8VPK|1|A|A|1163
8VPK|1|A|A|1164
8VPK|1|A|G|1165
8VPK|1|A|A|1166
8VPK|1|A|C|1167
8VPK|1|A|A|1168
8VPK|1|A|A|1169
8VPK|1|A|C|1170
8VPK|1|A|C|1171
*
8VPK|1|A|G|1224
8VPK|1|A|G|1225
8VPK|1|A|U|1226
8VPK|1|A|C|1227
8VPK|1|A|A|1228
8VPK|1|A|A|1229
8VPK|1|A|G|1230
8VPK|1|A|U|1231
8VPK|1|A|G|1232
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L6
- Chain I
- 50S ribosomal protein L10
Coloring options: