IL_8VPK_054

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_054 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1028

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8VPK|1|A|C|1472
8VPK|1|A|G|1473
8VPK|1|A|A|1474
8VPK|1|A|G|1475
8VPK|1|A|G|1476
*
8VPK|1|A|C|1485
8VPK|1|A|G|1486
8VPK|1|A|U|1487
8VPK|1|A|A|1488
8VPK|1|A|G|1489

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain Y

50S Ribosomal Protein L28

Chain d

50S ribosomal protein L34