IL_8VPK_057

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGAAUC*GGUAGUAG

Length

14 nucleotides

Bulged bases

8VPK|1|A|G|1541, 8VPK|1|A|A|1542, 8VPK|1|A|A|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|U|1540
8VPK|1|A|G|1541
8VPK|1|A|A|1542
8VPK|1|A|A|1543
8VPK|1|A|U|1544
8VPK|1|A|C|1545
*
8VPK|1|A|G|1625
8VPK|1|A|G|1626
8VPK|1|A|U|1627
8VPK|1|A|A|1628
8VPK|1|A|G|1629
8VPK|1|A|U|1630
8VPK|1|A|A|1631
8VPK|1|A|G|1632

Current chains

Chain A

23S ribosomal RNA

Nearby chains