IL_8VPK_082

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUUUGUGUAGGAUAG*CUCUGAUC

Length

23 nucleotides

Bulged bases

8VPK|1|A|U|2332, 8VPK|1|A|G|2333, 8VPK|1|A|G|2335, 8VPK|1|A|A|2337, 8VPK|1|A|G|2339, 8VPK|1|A|A|2340, 8VPK|1|A|U|2341, 8VPK|1|A|A|2342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|G|2329
8VPK|1|A|U|2330
8VPK|1|A|U|2331
8VPK|1|A|U|2332
8VPK|1|A|G|2333
8VPK|1|A|U|2334
8VPK|1|A|G|2335
8VPK|1|A|U|2336
8VPK|1|A|A|2337
8VPK|1|A|G|2338
8VPK|1|A|G|2339
8VPK|1|A|A|2340
8VPK|1|A|U|2341
8VPK|1|A|A|2342
8VPK|1|A|G|2343
*
8VPK|1|A|C|2400
8VPK|1|A|U|2401
8VPK|1|A|C|2402
8VPK|1|A|U|2403
8VPK|1|A|G|2404
8VPK|1|A|A|2405
8VPK|1|A|U|2406
8VPK|1|A|C|2407

Current chains

Chain A

23S ribosomal RNA

Nearby chains