IL_8VPK_084

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGGAGACUGUGAAGC*GUGGAGUCGUUGUUGAAAUAC

Length

36 nucleotides

Bulged bases

8VPK|1|A|U|2355, 8VPK|1|A|U|2387, 8VPK|1|A|U|2390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|G|2346
8VPK|1|A|G|2347
8VPK|1|A|G|2348
8VPK|1|A|A|2349
8VPK|1|A|G|2350
8VPK|1|A|A|2351
8VPK|1|A|C|2352
8VPK|1|A|U|2353
8VPK|1|A|G|2354
8VPK|1|A|U|2355
8VPK|1|A|G|2356
8VPK|1|A|A|2357
8VPK|1|A|A|2358
8VPK|1|A|G|2359
8VPK|1|A|C|2360
*
8VPK|1|A|G|2377
8VPK|1|A|U|2378
8VPK|1|A|G|2379
8VPK|1|A|G|2380
8VPK|1|A|A|2381
8VPK|1|A|G|2382
8VPK|1|A|U|2383
8VPK|1|A|C|2384
8VPK|1|A|G|2385
8VPK|1|A|U|2386
8VPK|1|A|U|2387
8VPK|1|A|G|2388
8VPK|1|A|U|2389
8VPK|1|A|U|2390
8VPK|1|A|G|2391
8VPK|1|A|A|2392
8VPK|1|A|A|2393
8VPK|1|A|A|2394
8VPK|1|A|U|2395
8VPK|1|A|A|2396
8VPK|1|A|C|2397

Current chains

Chain A

23S ribosomal RNA

Nearby chains