IL_8VPK_088
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CCCAAAGGUUCCCUC*GAGUG
- Length
- 20 nucleotides
- Bulged bases
- 8VPK|1|A|A|2510, 8VPK|1|A|A|2511, 8VPK|1|A|U|2520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VPK|1|A|C|2507
8VPK|1|A|C|2508
8VPK|1|A|C|2509
8VPK|1|A|A|2510
8VPK|1|A|A|2511
8VPK|1|A|A|2512
8VPK|1|A|G|2513
8VPK|1|A|G|2514
8VPK|1|A|U|2515
8VPK|1|A|U|2516
8VPK|1|A|C|2517
8VPK|1|A|C|2518
8VPK|1|A|C|2519
8VPK|1|A|U|2520
8VPK|1|A|C|2521
*
8VPK|1|A|G|2545
8VPK|1|A|A|2546
8VPK|1|A|G|2547
8VPK|1|A|U|2548
8VPK|1|A|G|2549
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S Ribosomal Protein L5
- Chain P
- 50S Ribosomal Protein L18
- Chain c
- 50S Ribosomal Protein L33
- Chain e
- 50S ribosomal protein L35
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