IL_8VPK_089

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAA*UGUUG

Length

8 nucleotides

Bulged bases

8VPK|1|A|U|2543, 8VPK|1|A|U|2544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|C|2521
8VPK|1|A|A|2522
8VPK|1|A|A|2523
*
8VPK|1|A|U|2541
8VPK|1|A|G|2542
8VPK|1|A|U|2543
8VPK|1|A|U|2544
8VPK|1|A|G|2545

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S Ribosomal Protein L5

Chain P

50S Ribosomal Protein L18