IL_8VPK_099

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8VPK|1|A|G|2800, 8VPK|1|A|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_099 not in the Motif Atlas

Homologous match to IL_9DFE_097

Geometric discrepancy: 0.0747

The information below is about IL_9DFE_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8VPK|1|A|C|2734
8VPK|1|A|U|2735
8VPK|1|A|C|2736
*
8VPK|1|A|G|2798
8VPK|1|A|C|2799
8VPK|1|A|G|2800
8VPK|1|A|A|2801
8VPK|1|A|G|2802

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain b

50S ribosomal protein L32