IL_8VPK_105

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUUGAG*CAAGACCAG

Length

15 nucleotides

Bulged bases

8VPK|1|A|C|3004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|C|2859
8VPK|1|A|U|2860
8VPK|1|A|U|2861
8VPK|1|A|G|2862
8VPK|1|A|A|2863
8VPK|1|A|G|2864
*
8VPK|1|A|C|2998
8VPK|1|A|A|2999
8VPK|1|A|A|3000
8VPK|1|A|G|3001
8VPK|1|A|A|3002
8VPK|1|A|C|3003
8VPK|1|A|C|3004
8VPK|1|A|A|3005
8VPK|1|A|G|3006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S Ribosomal Protein L13