IL_8VPK_113

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

8VPK|1|B|A|4

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_113 not in the Motif Atlas

Geometric match to IL_8P9A_388

Geometric discrepancy: 0.2508

The information below is about IL_8P9A_388

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8VPK|1|B|U|3
8VPK|1|B|A|4
8VPK|1|B|C|5
*
8VPK|1|B|G|113
8VPK|1|B|A|114

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain P

50S Ribosomal Protein L18