IL_8VR4_013

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUACC*GGAGUGAAAGAGUAC

Length

20 nucleotides

Bulged bases

8VR4|1|A|G|591, 8VR4|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VR4|1|A|G|569
8VR4|1|A|U|570
8VR4|1|A|A|571
8VR4|1|A|C|572
8VR4|1|A|C|573
*
8VR4|1|A|G|582
8VR4|1|A|G|583
8VR4|1|A|A|584
8VR4|1|A|G|585
8VR4|1|A|U|586
8VR4|1|A|G|587
8VR4|1|A|A|588
8VR4|1|A|A|589
8VR4|1|A|A|590
8VR4|1|A|G|591
8VR4|1|A|A|592
8VR4|1|A|G|593
8VR4|1|A|U|594
8VR4|1|A|A|595
8VR4|1|A|C|596

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S Ribosomal Protein L22

Chain V

50S ribosomal protein L24