IL_8VR4_014

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_014 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.106

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8VR4|1|A|A|623
8VR4|1|A|G|624
8VR4|1|A|A|625
8VR4|1|A|G|626
*
8VR4|1|A|U|646
8VR4|1|A|G|647
8VR4|1|A|A|648
8VR4|1|A|U|649

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S Ribosomal Protein L13

Chain R

50S Ribosomal Protein L20