IL_8VR4_015

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UC*GUG

Length

5 nucleotides

Bulged bases

8VR4|1|A|U|641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_015 not in the Motif Atlas

Geometric match to IL_1S03_005

Geometric discrepancy: 0.3633

The information below is about IL_1S03_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8VR4|1|A|U|630
8VR4|1|A|C|631
*
8VR4|1|A|G|640
8VR4|1|A|U|641
8VR4|1|A|G|642

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S Ribosomal Protein L13

Chain S

50S Ribosomal Protein L21