IL_8VR4_020

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8VR4|1|A|G|916, 8VR4|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_020 not in the Motif Atlas

Homologous match to IL_9DFE_016

Geometric discrepancy: 0.1318

The information below is about IL_9DFE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8VR4|1|A|G|789
8VR4|1|A|A|790
8VR4|1|A|A|791
8VR4|1|A|G|792
8VR4|1|A|C|793
*
8VR4|1|A|G|914
8VR4|1|A|U|915
8VR4|1|A|G|916
8VR4|1|A|A|917
8VR4|1|A|U|918
8VR4|1|A|A|919
8VR4|1|A|G|920
8VR4|1|A|C|921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain M

50S ribosomal protein L15