IL_8VR4_044

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8VR4|1|A|U|1151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_044 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.3193

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

8VR4|1|A|G|1149
8VR4|1|A|A|1150
8VR4|1|A|U|1151
8VR4|1|A|G|1152
*
8VR4|1|A|C|1239
8VR4|1|A|G|1240
8VR4|1|A|C|1241

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain N

Large ribosomal subunit protein uL16

Chain f

50S ribosomal protein L36