IL_8VR4_047

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCGCGAAGACAAC*GUCAAGUG

Length

21 nucleotides

Bulged bases

8VR4|1|A|A|1164, 8VR4|1|A|G|1165, 8VR4|1|A|A|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VR4|1|A|U|1158
8VR4|1|A|C|1159
8VR4|1|A|G|1160
8VR4|1|A|C|1161
8VR4|1|A|G|1162
8VR4|1|A|A|1163
8VR4|1|A|A|1164
8VR4|1|A|G|1165
8VR4|1|A|A|1166
8VR4|1|A|C|1167
8VR4|1|A|A|1168
8VR4|1|A|A|1169
8VR4|1|A|C|1170
*
8VR4|1|A|G|1225
8VR4|1|A|U|1226
8VR4|1|A|C|1227
8VR4|1|A|A|1228
8VR4|1|A|A|1229
8VR4|1|A|G|1230
8VR4|1|A|U|1231
8VR4|1|A|G|1232

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6