IL_8VR4_048

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGUGC*GCUC

Length

10 nucleotides

Bulged bases

8VR4|1|A|A|1206, 8VR4|1|A|U|1219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VR4|1|A|G|1205
8VR4|1|A|A|1206
8VR4|1|A|G|1207
8VR4|1|A|U|1208
8VR4|1|A|G|1209
8VR4|1|A|C|1210
*
8VR4|1|A|G|1217
8VR4|1|A|C|1218
8VR4|1|A|U|1219
8VR4|1|A|C|1220

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36