IL_8VR4_058

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUCAGCGGUACUAAC*GGACCUUCGUUGGU

Length

29 nucleotides

Bulged bases

8VR4|1|A|U|1619, 8VR4|1|A|U|1620, 8VR4|1|A|C|1621

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VR4|1|A|A|1543
8VR4|1|A|U|1544
8VR4|1|A|C|1545
8VR4|1|A|A|1546
8VR4|1|A|G|1547
8VR4|1|A|C|1548
8VR4|1|A|G|1549
8VR4|1|A|G|1550
8VR4|1|A|U|1551
8VR4|1|A|A|1552
8VR4|1|A|C|1553
8VR4|1|A|U|1554
8VR4|1|A|A|1555
8VR4|1|A|A|1556
8VR4|1|A|C|1557
*
8VR4|1|A|G|1614
8VR4|1|A|G|1615
8VR4|1|A|A|1616
8VR4|1|A|C|1617
8VR4|1|A|C|1618
8VR4|1|A|U|1619
8VR4|1|A|U|1620
8VR4|1|A|C|1621
8VR4|1|A|G|1622
8VR4|1|A|U|1623
8VR4|1|A|U|1624
8VR4|1|A|G|1625
8VR4|1|A|G|1626
8VR4|1|A|U|1627

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2