IL_8VR4_086

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_086 not in the Motif Atlas

Geometric match to IL_8VTW_075

Geometric discrepancy: 0.1342

The information below is about IL_8VTW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8VR4|1|A|G|2157
8VR4|1|A|C|2158
*
8VR4|1|A|G|2188
8VR4|1|A|C|2189
8VR4|1|A|A|2190
8VR4|1|A|C|2191

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX