IL_8VR4_092

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AC*GGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_092 not in the Motif Atlas

Geometric match to IL_4WF9_047

Geometric discrepancy: 0.1488

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8VR4|1|A|A|2306
8VR4|1|A|C|2307
*
8VR4|1|A|G|2458
8VR4|1|A|G|2459
8VR4|1|A|U|2460

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain Y

50S Ribosomal Protein L28