IL_8VR4_097

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGUAGGAUAGGUGGGAG*UCGUUGUUGAAAUACCACUC

Length

38 nucleotides

Bulged bases

8VR4|1|A|U|2334, 8VR4|1|A|G|2338, 8VR4|1|A|G|2339, 8VR4|1|A|A|2342, 8VR4|1|A|U|2386, 8VR4|1|A|U|2387, 8VR4|1|A|U|2389, 8VR4|1|A|G|2391, 8VR4|1|A|A|2392, 8VR4|1|A|A|2396

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VR4|1|A|G|2333
8VR4|1|A|U|2334
8VR4|1|A|G|2335
8VR4|1|A|U|2336
8VR4|1|A|A|2337
8VR4|1|A|G|2338
8VR4|1|A|G|2339
8VR4|1|A|A|2340
8VR4|1|A|U|2341
8VR4|1|A|A|2342
8VR4|1|A|G|2343
8VR4|1|A|G|2344
8VR4|1|A|U|2345
8VR4|1|A|G|2346
8VR4|1|A|G|2347
8VR4|1|A|G|2348
8VR4|1|A|A|2349
8VR4|1|A|G|2350
*
8VR4|1|A|U|2383
8VR4|1|A|C|2384
8VR4|1|A|G|2385
8VR4|1|A|U|2386
8VR4|1|A|U|2387
8VR4|1|A|G|2388
8VR4|1|A|U|2389
8VR4|1|A|U|2390
8VR4|1|A|G|2391
8VR4|1|A|A|2392
8VR4|1|A|A|2393
8VR4|1|A|A|2394
8VR4|1|A|U|2395
8VR4|1|A|A|2396
8VR4|1|A|C|2397
8VR4|1|A|C|2398
8VR4|1|A|A|2399
8VR4|1|A|C|2400
8VR4|1|A|U|2401
8VR4|1|A|C|2402

Current chains

Chain A

23S ribosomal RNA

Nearby chains