IL_8VR4_103

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VR4_103 not in the Motif Atlas

Homologous match to IL_9DFE_092

Geometric discrepancy: 0.1353

The information below is about IL_9DFE_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8VR4|1|A|G|2678
8VR4|1|A|G|2679
*
8VR4|1|A|C|2720
8VR4|1|A|A|2721
8VR4|1|A|C|2722

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S Ribosomal Protein L27

Chain D

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein uL16