IL_8VR4_123
3D structure
- PDB id
- 8VR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGAAG*UGCAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VR4_123 not in the Motif Atlas
- Homologous match to IL_4WF9_108
- Geometric discrepancy: 0.1714
- The information below is about IL_4WF9_108
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_70411.2
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VR4|1|A|U|3068
8VR4|1|A|G|3069
8VR4|1|A|G|3070
8VR4|1|A|A|3071
8VR4|1|A|A|3072
8VR4|1|A|G|3073
*
8VR4|1|A|U|3086
8VR4|1|A|G|3087
8VR4|1|A|C|3088
8VR4|1|A|A|3089
8VR4|1|A|G|3090
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L17
- Chain Q
- 50S ribosomal protein L19
Coloring options: