IL_8VRL_013

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUACC*GGAGUGAAAGAGUAC

Length

20 nucleotides

Bulged bases

8VRL|1|A|G|591, 8VRL|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VRL|1|A|G|569
8VRL|1|A|U|570
8VRL|1|A|A|571
8VRL|1|A|C|572
8VRL|1|A|C|573
*
8VRL|1|A|G|582
8VRL|1|A|G|583
8VRL|1|A|A|584
8VRL|1|A|G|585
8VRL|1|A|U|586
8VRL|1|A|G|587
8VRL|1|A|A|588
8VRL|1|A|A|589
8VRL|1|A|A|590
8VRL|1|A|G|591
8VRL|1|A|A|592
8VRL|1|A|G|593
8VRL|1|A|U|594
8VRL|1|A|A|595
8VRL|1|A|C|596

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL22

Chain V

50S ribosomal protein L24