IL_8VRL_027

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGU*AGAG

Length

7 nucleotides

Bulged bases

8VRL|1|A|G|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_027 not in the Motif Atlas

Geometric match to IL_8VTW_024

Geometric discrepancy: 0.3051

The information below is about IL_8VTW_024

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

8VRL|1|A|U|959
8VRL|1|A|G|960
8VRL|1|A|U|961
*
8VRL|1|A|A|1048
8VRL|1|A|G|1049
8VRL|1|A|A|1050
8VRL|1|A|G|1051

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L30