IL_8VRL_052
3D structure
- PDB id
- 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- AUGAGUAG*CGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VRL_052 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.1381
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8VRL|1|A|A|1377
8VRL|1|A|U|1378
8VRL|1|A|G|1379
8VRL|1|A|A|1380
8VRL|1|A|G|1381
8VRL|1|A|U|1382
8VRL|1|A|A|1383
8VRL|1|A|G|1384
*
8VRL|1|A|C|2235
8VRL|1|A|G|2236
8VRL|1|A|A|2237
8VRL|1|A|A|2238
8VRL|1|A|A|2239
8VRL|1|A|U|2240
8VRL|1|A|U|2241
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain R
- Large ribosomal subunit protein bL20
- Chain T
- Large ribosomal subunit protein uL22
- Chain b
- 50S ribosomal protein L32
Coloring options: