IL_8VRL_059

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAGCGGUACUAAC*GGACCUUCGUUG

Length

25 nucleotides

Bulged bases

8VRL|1|A|U|1619, 8VRL|1|A|U|1620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VRL|1|A|C|1545
8VRL|1|A|A|1546
8VRL|1|A|G|1547
8VRL|1|A|C|1548
8VRL|1|A|G|1549
8VRL|1|A|G|1550
8VRL|1|A|U|1551
8VRL|1|A|A|1552
8VRL|1|A|C|1553
8VRL|1|A|U|1554
8VRL|1|A|A|1555
8VRL|1|A|A|1556
8VRL|1|A|C|1557
*
8VRL|1|A|G|1614
8VRL|1|A|G|1615
8VRL|1|A|A|1616
8VRL|1|A|C|1617
8VRL|1|A|C|1618
8VRL|1|A|U|1619
8VRL|1|A|U|1620
8VRL|1|A|C|1621
8VRL|1|A|G|1622
8VRL|1|A|U|1623
8VRL|1|A|U|1624
8VRL|1|A|G|1625

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2