IL_8VRL_085

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_085 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2901

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8VRL|1|A|A|2073
8VRL|1|A|G|2074
8VRL|1|A|G|2075
8VRL|1|A|A|2076
8VRL|1|A|C|2077
8VRL|1|A|C|2078
*
8VRL|1|A|G|2105
8VRL|1|A|A|2106
8VRL|1|A|G|2107
8VRL|1|A|A|2108
8VRL|1|A|A|2109
8VRL|1|A|U|2110

Current chains

Chain A

23S ribosomal RNA

Nearby chains