IL_8VRL_086

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUAA*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_086 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1687

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8VRL|1|A|U|2081
8VRL|1|A|U|2082
8VRL|1|A|A|2083
8VRL|1|A|A|2084
*
8VRL|1|A|U|2098
8VRL|1|A|G|2099
8VRL|1|A|A|2100
8VRL|1|A|A|2101
8VRL|1|A|G|2102

Current chains

Chain A

23S ribosomal RNA

Nearby chains