IL_8VRL_095

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUUGUGUAGGAUAGGUGGGAG*CGUUGUUGAAAUACCACUCUGA

Length

43 nucleotides

Bulged bases

8VRL|1|A|U|2334, 8VRL|1|A|A|2340, 8VRL|1|A|A|2342, 8VRL|1|A|A|2349, 8VRL|1|A|U|2386, 8VRL|1|A|U|2389, 8VRL|1|A|G|2391, 8VRL|1|A|A|2392, 8VRL|1|A|A|2396, 8VRL|1|A|C|2397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VRL|1|A|U|2330
8VRL|1|A|U|2331
8VRL|1|A|U|2332
8VRL|1|A|G|2333
8VRL|1|A|U|2334
8VRL|1|A|G|2335
8VRL|1|A|U|2336
8VRL|1|A|A|2337
8VRL|1|A|G|2338
8VRL|1|A|G|2339
8VRL|1|A|A|2340
8VRL|1|A|U|2341
8VRL|1|A|A|2342
8VRL|1|A|G|2343
8VRL|1|A|G|2344
8VRL|1|A|U|2345
8VRL|1|A|G|2346
8VRL|1|A|G|2347
8VRL|1|A|G|2348
8VRL|1|A|A|2349
8VRL|1|A|G|2350
*
8VRL|1|A|C|2384
8VRL|1|A|G|2385
8VRL|1|A|U|2386
8VRL|1|A|U|2387
8VRL|1|A|G|2388
8VRL|1|A|U|2389
8VRL|1|A|U|2390
8VRL|1|A|G|2391
8VRL|1|A|A|2392
8VRL|1|A|A|2393
8VRL|1|A|A|2394
8VRL|1|A|U|2395
8VRL|1|A|A|2396
8VRL|1|A|C|2397
8VRL|1|A|C|2398
8VRL|1|A|A|2399
8VRL|1|A|C|2400
8VRL|1|A|U|2401
8VRL|1|A|C|2402
8VRL|1|A|U|2403
8VRL|1|A|G|2404
8VRL|1|A|A|2405

Current chains

Chain A

23S ribosomal RNA

Nearby chains