IL_8VRL_104

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

8VRL|1|A|U|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VRL_104 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1808

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8VRL|1|A|A|2683
8VRL|1|A|U|2684
8VRL|1|A|C|2685
*
8VRL|1|A|G|2713
8VRL|1|A|G|2714
8VRL|1|A|U|2715
8VRL|1|A|U|2716
8VRL|1|A|U|2717

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S Ribosomal Protein L27

Chain 4

GTPase HflX

Chain N

Large ribosomal subunit protein uL16