IL_8VSA_010

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_010 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.15

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8VSA|1|16S|C|132
8VSA|1|16S|U|133
8VSA|1|16S|G|134
8VSA|1|16S|C|135
8VSA|1|16S|C|136
*
8VSA|1|16S|G|227
8VSA|1|16S|A|228
8VSA|1|16S|U|229
8VSA|1|16S|G|230

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S16

30S ribosomal protein S16

Chain S20

30S ribosomal protein S20