IL_8VSA_012

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_012 not in the Motif Atlas

Homologous match to IL_5J7L_011

Geometric discrepancy: 0.2314

The information below is about IL_5J7L_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8VSA|1|16S|G|144
8VSA|1|16S|G|145
8VSA|1|16S|G|146
*
8VSA|1|16S|C|176
8VSA|1|16S|G|177
8VSA|1|16S|C|178

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S20

30S ribosomal protein S20