IL_8VSA_025

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_025 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2089

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8VSA|1|16S|U|409
8VSA|1|16S|G|410
8VSA|1|16S|A|411
8VSA|1|16S|A|412
8VSA|1|16S|G|413
8VSA|1|16S|A|414
8VSA|1|16S|A|415
8VSA|1|16S|G|416
*
8VSA|1|16S|U|427
8VSA|1|16S|G|428
8VSA|1|16S|U|429
8VSA|1|16S|A|430
8VSA|1|16S|A|431
8VSA|1|16S|A|432
8VSA|1|16S|G|433

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S04

30S ribosomal protein S4