IL_8VSA_033
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGCAG*UCAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VSA_033 not in the Motif Atlas
- Homologous match to IL_5J7L_027
- Geometric discrepancy: 0.1335
- The information below is about IL_5J7L_027
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8VSA|1|16S|C|580
8VSA|1|16S|G|581
8VSA|1|16S|C|582
8VSA|1|16S|A|583
8VSA|1|16S|G|584
*
8VSA|1|16S|U|757
8VSA|1|16S|C|758
8VSA|1|16S|A|759
8VSA|1|16S|G|760
8VSA|1|16S|G|761
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain S08
- 30S ribosomal protein S8
- Chain S12
- 30S ribosomal protein S12
- Chain S15
- Small ribosomal subunit protein uS15
- Chain S17
- Small ribosomal subunit protein uS17
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