IL_8VSA_036

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_036 not in the Motif Atlas

Homologous match to IL_5J7L_029

Geometric discrepancy: 0.1272

The information below is about IL_5J7L_029

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

8VSA|1|16S|G|597
8VSA|1|16S|U|598
*
8VSA|1|16S|A|640
8VSA|1|16S|U|641
8VSA|1|16S|A|642
8VSA|1|16S|C|643

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S08

30S ribosomal protein S8

Chain S17

Small ribosomal subunit protein uS17