IL_8VSA_044

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_044 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1055

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8VSA|1|16S|C|779
8VSA|1|16S|A|780
8VSA|1|16S|A|781
8VSA|1|16S|A|782
8VSA|1|16S|C|783
*
8VSA|1|16S|G|799
8VSA|1|16S|G|800
8VSA|1|16S|U|801
8VSA|1|16S|A|802
8VSA|1|16S|G|803

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA

Chain S11

30S ribosomal protein S11

Chain S21

30S ribosomal protein S21