IL_8VSA_052

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|16S|G|1003
8VSA|1|16S|A|1004
8VSA|1|16S|A|1005
8VSA|1|16S|G|1006
*
8VSA|1|16S|U|1023
8VSA|1|16S|G|1024
8VSA|1|16S|U|1025
8VSA|1|16S|G|1026
8VSA|1|16S|C|1027
8VSA|1|16S|C|1028
8VSA|1|16S|U|1029
8VSA|1|16S|U|1030
8VSA|1|16S|C|1031
8VSA|1|16S|G|1032
8VSA|1|16S|G|1033
8VSA|1|16S|G|1034
8VSA|1|16S|A|1035
8VSA|1|16S|A|1036
8VSA|1|16S|C|1037

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S14

Small ribosomal subunit protein uS14