3D structure

PDB id
8VSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCUUUG*CAAAGG
Length
12 nucleotides
Bulged bases
None detected
QA status
Self-complementary: CCUUUG,CAAAGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8VSA|1|16S|C|1119
8VSA|1|16S|C|1120
8VSA|1|16S|U|1121
8VSA|1|16S|U|1122
8VSA|1|16S|U|1123
8VSA|1|16S|G|1124
*
8VSA|1|16S|C|1149
8VSA|1|16S|A|1150
8VSA|1|16S|A|1151
8VSA|1|16S|A|1152
8VSA|1|16S|G|1153
8VSA|1|16S|G|1154

Current chains

Chain 16S
16S ribosomal RNA

Nearby chains

Chain S09
Small ribosomal subunit protein uS9
Chain S10
30S ribosomal protein S10

Coloring options:

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