IL_8VSA_058

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUUUG*CAAAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCUUUG,CAAAGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|16S|C|1119
8VSA|1|16S|C|1120
8VSA|1|16S|U|1121
8VSA|1|16S|U|1122
8VSA|1|16S|U|1123
8VSA|1|16S|G|1124
*
8VSA|1|16S|C|1149
8VSA|1|16S|A|1150
8VSA|1|16S|A|1151
8VSA|1|16S|A|1152
8VSA|1|16S|G|1153
8VSA|1|16S|G|1154

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S09

Small ribosomal subunit protein uS9

Chain S10

30S ribosomal protein S10